Genetic structure of natural populations of Cedrelinga Cateniformis ‟tornillo” from the oriental region of Peru
DOI:
https://doi.org/10.17268/sci.agropecu.2020.04.07Keywords:
Cedrelinga cateniformis, tornillo, Genetic diversity, genetic structure, RAPDs.Abstract
Tornillo is a forest species of wide distribution in the Peruvian Amazon, its irrational exploitation has generated losses in its diversity. Currently, there is no baseline for the development of conservation strategies due to limited knowledge of the structure genetic in tornillo populations which would allow the implementation of an adequate conservation program for the species. 91 individuals of the species were collected in five departments (Madre de Dios, Loreto, Puno, San Martín and Ucayali). The 5 most polymorphic RAPD primers were selected (OPA02, OPA04, OPA12, OPA18, and OPF05), identifying 96 polymorphic markers. The PIC ranged from 0.24 - 0.31; the AMP was 47.86%. No duplicates were reported. He between populations varied between 0.265 - 0.296; Madre de Dios presented a lower value (0.174). The Shannon index presented the same variation (0.402 - 0.447; 0.262). There is a spatial-genetic correlation (rxy = 0.311; p value < 0.001), specifically a genetic variability is found between departments (PhiPT = 0.256; p value < 0.0001). Loreto and Ucayali are genetically related. At the same time, San Martín and Puno have an origin in Ucayali (Masisea) and San Martín have an origin in Loreto (San Juan Bautista). These results will allow to initiate the bases of a conservation program for the sustainable use of the species.
References
Andrianoelina, O.; Rakotondraoelina, H.; Ramamonjisoa, L.; et al. 2006. Genetic diversity of Dalbergia monticola (Fabaceae) an endangered tree species in the fragmented oriental forest of Madagascar. Biodiversity and Conservation 15(4): 1109-1128.
Aróstegui, V.A.; Díaz, P.M. 1992. Propagación de especies forestales nativas promisorias en Jenaro Herrera. Instituto de Investigación de la Amazonía Peruana. 128 pp.
Arroyo, A.; Bruno, C.; Di Rienzo, J.; et al. 2005. Árboles de expansión minimos: Ayudas para una mejor interpretación de ordenaciones en Banco de Germoplasma. Interciencia 30(9): 51-63.
Bacilieri, R.; Labbe, T.; Kremer, A. 1994. Intraspecific genetic structure in a mixed population of Quercus petraea (Matt.) Leibl and Q. robur L. Heredity 73(2): 130-141.
Bala, G.; Caldeira, K.; Wickett, M.; et al. 2007. Combined climate and carbon-cycle effects of large-scale deforestation. Proceedings of the National Academy of Sciences of the United States of America 104(16): 6550-6555.
Baldoni, A.B.; Ribeiro Teodoro, L.P.; Eduardo Teodoro, P.; et al. 2020. Genetic diversity of Brazil nut tree (Bertholletia excelsa Bonpl.) in southern Brazilian Amazon. Forest Ecology and Management 458: 117795.
Baluarte, V.J.; Alvarez, G.J. 2015. Modelamiento del crecimiento del Tornillo Cedrelinga catenaeformis Ducke en plantaciones en Jenraro Herrera, Departamento de Loreto, Perú. Folia Amazónica 24(1): 21-32.
Balzarini, M.; Di Rienzo, J. 2004. Info-Gen: Software para análisis estadístico de datos genéticos. Argentina: Facultad de Ciencia Agropecuarias, Universidad Nacional de Córdoba.
Balzarini, M.; Di Rienzo, J. 2016. InfoGen version 2016. Disponible en: http://www.info-gen.com.ar
Balzarini, M.; Peña, T.I.; Di Rienzo, J. 2010. Estadística en Biotecnología. Aplicaciones en Info-gen. (1st ed.). Encuentro Grupo Editor.
Barber, C.P.; Cochrane, M.A.; Souza, C.M.; et al. 2014. Roads, deforestation, and the mitigating effect of protected areas in the Amazon. Biological Conservation 177: 203-209.
Botstein, D.; White, R.L.; Skolnick, M.; et al. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American journal of human genetics 32(3): 314-331.
Bucci, G.; Vendramin, G.G.; Lelli, L.; et al. 1997. Assessing the genetic divergence of Pinus leucodermis Ant. endangered populations: Use of molecular markers for conservation purposes. Theoretical and Applied Genetics 95(7): 1138-1146.
Busch, J.; Amarjargal, O. 2020. Authority of Second-Tier Governments to Reduce Deforestation in 30 Tropical Countries. Frontiers in Forests and Global Change 3:1
Casiva, P.V.; Saidman, B.O.; Vilardi, J.C.; et al. 2002. First comparative phenetic studies of argentinean species of Acacia (Fabaceae), using morphometric, isozymal, and RAPD approaches. American Journal of Botany 89(5): 843-853.
Canadell, J.G.; Raupach, M.R. 2008. Managing forests for climate change mitigation. In Science 320(5882): 1456-1457.
Chalmers, K.J.; Waugh, R.; Sprent, J.I.; et al. 1992. Detection of genetic variation between and within populations of Gliricidia sepium and G. maculata using RAPD markers. Heredity 69(5): 465-472.
Chen, C.; Chu, Y.; Ding, C.; et al. 2020. Genetic diversity and population structure of black cottonwood (Populus deltoides) revealed using simple sequence repeat markers. BMC Genetics 21(1): 1-12.
Cruz, W.; Ramos, H.; Cuellar, J. 2019. Manual de protocolos para el estudio de diversidad genética en especies forestales nativas: Tornillo (Cedrelinga cateniformis (Ducke) Ducke), Capirona (Calycophyllum spruceanum Benth.), Shihuahuaco (Dipteryx sp.), Ishpingo (Amburana sp.) y Castaña (Bertholletia excelsa. Instituto Nacional de Innovación Agraria. Lima, Perú.
Di Rienzo J.A.; Casanoves, F.; Balzarini M.G.; et al. 2015. InfoStat versión 2015. Grupo InfoStat, FCA, Universidad Nacional de Córdoba, Argentina. Disponible en: http://www.infostat.com.ar
Díaz-Vargas, M.V. 2001. Caracterización de la diversidad genética de poblaciones naturales de Pinus oocarpa en Nicaragua a través de marcadores moleculares. Tesis de doctorado. Universidad de Alcalá, Madrid. España.
Estoque, R.C.; Ooba, M.; Avitabile, V.; et al. 2019. The future of Southeast Asia’s forests. Nature Communications 10(1): 1-12.
FAO. 2018. La industria de la madera en el Perú, identificación de las barreras y oportunidades para el comercio interno de productos responsables de madera, proveniente de fuentes sostenibles y legales en las MYPES del Perú. 178 pp.
Garcia-Davila, C.; Aldana-Gomero, D.; Renno, J.F.; et al. 2020. Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon. Genetica 148(1): 1-11.
Gillies, A.C.M.; Cornelius, J.P.; Newton, et al. 1997. Genetic variation in Costa Rican populations of the tropical timber species Cedrela odorata L., assessed using RAPDs. Molecular Ecology 6(12): 1133-1145.
Gillies, A.C.M.; Navarro, C.; Lowe, A.J.; et al. 1999. Genetic diversity in Mesoamerican populations of Mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83(6): 722-732.
Gonçalez, J.; Gonçalves, D.M. 2001. Valorizaçâo de duas espécies de madeira Cedrelinga catenaeformis e Enterolobium shomburgkii para a indústria madeireira valorization of two Brazilian Timbers Cedrelinga catenaeformis e Enterolobium shomburgkii. Revista Científica do Laboratório de Produtos Florestais 71: 69-74.
Goyal, M.; Singh, S.; Sibinga, E.M.S.; et al. 2014. Meditation Programs for Psychological Stress and Well-being: A Systematic Review and Meta-analysis. JAMA Intern Med. 174(3): 357-368.
Guariguata, M.R.; Cornelius, J.P.; Locatelli, B.; et al. 2008. Mitigation needs adaptation: Tropical forestry and climate change. Mitigation and Adaptation Strategies for Global Change 13(8): 793-808.
Haag, V.; Koch, G.; Melcher, E.; et al. 2020. Characterization of the wood properties of Cedrelinga cateniformis as substitute for timbers used for window manufacturing and outdoor applications. Maderas. Ciencia y tecnología 22(1): 23-36.
Hamrick, J.L.; Godt, M.J.W. 1990. Allozyme Diversity in Plant Species. In: Plant Population Genetics, Breeding, and Genetic Resources (Brown HD, Clegg MT, Kahler AL and Weir BS, eds.). Sinauer Associates Inc., Sunderland.
Hamrick, J.L.; Godt, M.J.W.; Sherman-Broyles, S.L. 1992. Factors influencing levels of genetic diversity in woody plant species. New Forests 6(1-4): 95-124.
INIA. 2010. Propiedades físico mecanicas de la especie “tornillo” Cedrelinga cateniformis (Ducke) Ducke proveniente de plantaciones en fajas del bosque nacional Alexander vonHumboldt-Ucayali.
IIAP. 2009. Evaluación económica de plantaciones de Tornillo “Cedrelinga catenaeformis”, en el departamento de Loreto. In Gutiérrez et al. (eds.); 10th ed. IIAP. Peru.
Kanae, S.; Oki, T.; Musiake, K. 2001. Impact of Deforestation on Regional Precipitation over the Indochina Peninsula. J. Hydrometeor 2(1): 51-70.
Leakey, R.R.B.; Simons, A.J. 1997. The domestication and commercialization of indigenous trees in agroforestry for the alleviation of poverty. Agroforestry Systems 38(1–3): 165-176.
Ledig, F.T. 1992. Human Impacts on Genetic Diversity in Forest Ecosystems. Oikos 63(1): 87-108.
Nesbitt, K.A.; Potts, B.M.; Vaillancourt, R.E.; et al. 1997. Fingerprinting and pedigree analysis in Eucalyptus globulus using RAPDs. Silvae Genetica 46(1): 6-11.
Newton, A.C.; Allnutt, T.R.; Gillies, A.C.M.; et al. 1999. Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution 14(4): 140-145.
Nogherotto, R.; Coppola, E.; Giorgi, F.; et al. 2013. Impact of Congo Basin deforestation on the African monsoon. Atmospheric Science Letters 14(1): 45-51.
Peakall, R.; Smouse, P.E. 2016. genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes. Molecular Ecology Notes 6(1): 288-295.
Peakall, R.; Smouse, P.E. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics (Oxford, England) 28(19): 2537-2539.
Perrier, X.; Jacquemoud-Collet, J.P. 2006. DARwin Software. http://darwin.cirad.fr/darwin.
Rasolofoson, R.A.; Ferraro, P.J.; Jenkins, C.N.; et al. 2015. Effectiveness of Community Forest Management at reducing deforestation in Madagascar. Biological Conservation 184: 271-277.
Rossetto, M.; Kooyman, R.; Sherwin, W.; et al. 2008. Dispersal limitations, rather than bottlenecks or habitat specificity, can restrict the distribution of rare and endemic rainforest trees. American Journal of Botany 95(3): 321-329.
Sherwin, W.B.; Jabot, F.; Rush, R.; et al. 2006. Measurement of biological information with applications from genes to landscapes. Molecular Ecology 15(10): 2857-2869.
Spracklen, D.V.; Garcia-Carreras, L. 2015. The impact of Amazonian deforestation on Amazon basin rainfall. Geophysical Research Letters 42(21): 9546-9552.
Tijerino, A.; Callejas, L.; Cerda-Granados, D.A. 2016. Assessment of Genetic Diversity in Five Nicaraguan Populations of Cedrela odorata L. (Meliaceae) using RAPD Markers. Encuentro 103: 28-39.
Wang, B.; Shi, L.; Ruan, Z.; et al. 2011. Genetic diversity and differentiation in Dalbergia sissoo (Fabaceae) as revealed by RAPD Genetic diversity and differentiation in Dalbergia sissoo. Genetics and Molecular Research 10(1): 114-120.
Zou, X.; Zucca, C.P.; Waide, R.B.; et al. 1995. Long-term influence of deforestation on tree species composition and litter dynamics of a tropical rain forest in Puerto Rico. Forest Ecology and Management 78(1-3): 147-157.
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